@preamble{{\newcommand{\noopsort}[1]{} } # {\newcommand{\singleletter}[1]{#1} }}
@comment{{\nooopsort command is a trick to sort in reverse chronilogical
order counting backwards from zzzz,zzzy,zzzx,etc
http://newton.ex.ac.uk/tex/pack/bibtex/btxdoc/node3.html }}
@article{Ahmed2015,
title = {{Volumetric RECIST Assessment of Hepatocellular Carcinoma Response to Sorafenib via Random Forest based Automated Segmentation}},
author = {{\noopsort{zzyq}}K.~Ahmed and
{\bf D.~Fuentes} and
J.S.~Lin and
R.~Ali and
A.~Kaseb and
W.~Wei and
J.D.~Hazle and
A.~Qayyum and
K.~Elsayes },
journal = {Radiology},
publisher = {Radiological Society of North America},
year = {2015},
note = {Submitted}
}
@article{tam2015ire,
title = {{Irreversible Electroporation (IRE) in the Epidural Space of the Porcine Spine: Effects on Dose Limiting Organs}},
author = {{\noopsort{zzys}} Figueira, T. and {\bf D.~Fuentes} and Gagea,M. and Ensor, J. and Dixon,K. and McWatters,A. and Gupta,S. and Tam, A.},
journal = {Radiology},
publisher = {Radiological Society of North America},
year = {2015},
note = {in review}
}
@article{oden2015toward,
title = {Toward Predictive Multiscale Modeling of Vascular Tumor Growth},
author = {{\noopsort{zzyt}}Oden, J Tinsley and Lima, Ernesto ABF and
Almeida, Regina C and Feng, Yusheng and Rylander, Marissa Nichole and
{\bf D.~Fuentes} and Faghihi, Danial and Rahman, Mohammad M and DeWitt,
Matthew and Gadde, Manasa },
journal = {Archives of Computational Methods in
Engineering},
pages = {1--45},
year = {2015},
publisher = {Springer}
}
@article{Bankson15,
title = {Kinetic modeling and constrained reconstruction of hyperpolarized 1-13C-pyruvate offers improved metabolic imaging of tumors},
author = {{\noopsort{zzyu}}Bankson, James A and Walker, Christopher M and
Ramirez, Marc S and Stefan, Wolfgang and {\bf D.~Fuentes} and Merritt, Matthew E and Lee, Jaehyuk and Sandulache, Vlad C and Chen, Yunyun and Phan, Liem and others},
journal = {Cancer research},
pages = {canres--0171},
year = {2015},
publisher = {AACR}
}
@article{Maier15,
author = {{\noopsort{zzyv}}F.~Maier and C.~J.~MacLellan and {\bf D.~Fuentes} and E.N.K~Cressman and K.~Hwang and J.~D.~Hazle and R.~J.~Stafford},
title = {{A Multi-Parametric Pulse Sequence for Characterization of Thermochemical Ablation Injections}},
journal = {International Journal of Hyperthermia},
year = {2015},
note = {in review}
}
@article{Madankan15,
author = {{\noopsort{zzyx}}R.~Madankan and W.~Stefan and J.~D.~Hazle and R.~J.~Stafford and {\noopsort{zzyx}}{\bf D.~Fuentes}},
title = {{Accelerated Model-based Signal Reconstruction for Magnetic Resonance Imaging in Presence of Uncertainties}},
year = {2015},
note = {in review},
journal = {{PMB}}
}
@article{Fahrenholtz15,
author = {{\noopsort{zzyy}}S.~Fahrenholtz and T.~Moon and M.~Franco and D.~Medina and J.~D.~Hazle and R.~J.~Stafford and F.~Maier and S.~Danish and A.~Gowda and A.~Shetty and T.~Warburton and {\noopsort{zzyy}}{\bf D.~Fuentes} },
title = {{A Model Evaluation Study for Treatment Planning of Laser Induced Thermal Therapy.}},
journal = {International Journal of Hyperthermia},
volume = {31},
number = {7},
pages = {705--714},
year = {2015},
publisher = {Taylor \& Francis}
}
@article{yung15,
author = {{\noopsort{zzyz}}J.~Yung and {\bf D.~Fuentes} and C.~J.~MacLellan and F.~Maier and J.~D.~Hazle and R.~J.~Stafford},
title = {{Referenceless Magnetic Resonance Temperature Imaging using Gaussian Process Modeling}},
year = {2015},
note = {in review},
journal = {{Medical Physics}}
}
@article{stefan15,
author = {{\noopsort{zzza}}W.~Stefan and {\bf D.~Fuentes} and E.~Yeniaras and K.~Hwang and J.~D.~Hazle and R.~J.~Stafford},
title = {{Novel Method for Background Phase Removal on MRI Proton Resonance Frequency Measurements}},
year = {2015},
note = {in review},
journal = {{Trans. Medical Imaging}}
}
@article{Fuentes2014,
author = {{\noopsort{zzzb}}{\bf D.~Fuentes} and J.~Contreras and J.~Yu and R.~He and E.~Castillo and R.~Castillo and T.~Guerrero},
doi = {10.1007/s11548-014-1128-3},
isbn = {1154801411},
issn = {1861-6410},
journal = {International Journal of Computer Assisted Radiology and Surgery},
pages = {393--401},
title = {{Morphometry-based measurements of the structural response to whole-brain radiation}},
url = {http://link.springer.com/10.1007/s11548-014-1128-3},
volume = {10},
year = {2014}
}
@article{maier14,
author = {{\noopsort{zzzc}}F. Maier and {\bf D.~Fuentes} and J.~S.~Weinberg and J.~Hazle and R.~J.~Stafford},
title = {{Robust Phase Unwrapping using a Sorted List, Multi-clustering Algorithm}},
journal = {Magnetic Resonance in Medicine},
volume = {73},
number = {4},
issn = {1522-2594},
url = {http://dx.doi.org/10.1002/mrm.25279},
doi = {10.1002/mrm.25279},
pages = {1662--1668},
year = {2015}
}
@article{castillo2014computing,
title = {Computing global minimizers to a constrained B-spline image registration problem from optimal l1 perturbations to block match data},
author = {{\noopsort{zzzd}}Castillo, Edward and Castillo, Richard and {\bf
D.~Fuentes} and Guerrero, Thomas},
journal = {Medical physics},
volume = {41},
number = {4},
pages = {041904},
year = {2014},
publisher = {American Association of Physicists in Medicine}
}
@article{maclellan2013estimating,
title = {Estimating nanoparticle optical absorption with magnetic resonance temperature imaging and bioheat transfer simulation},
author = {{\noopsort{zzze}}MacLellan, Christopher J and {\bf D.~Fuentes} and Elliott, Andrew M and Schwartz, Jon and Hazle, John D and Stafford, R Jason},
journal = {International Journal of Hyperthermia},
volume = {30},
number = {1},
pages = {47--55},
year = {2013},
publisher = {Informa UK Ltd. London}
}
@inbook{fuentesoden2013,
editor = {F.~Darema},
author = {{\noopsort{zzzf}}{\bf D.~Fuentes} and Oden, JT and Diller, KR and Yung, J and Feng, Y and Hazle, JD and Shetty, A and Stafford, RJ},
chapter = {{Computational and MR-guided Patient-Specific Laser Induced Thermal Therapy of Cancer}},
title = {{Dynamic Data Driven Application Systems}},
note = {{accepted}},
publisher = {{Springer }},
year = {2013}
}
@article{yeniaras12,
author = {{\noopsort{zzzg}}Yeniaras, E. and {\bf D.~Fuentes} and Fahrenholtz, S.J. and Weinberg, J.S. and Maier, F. and Hazle, J.D. and Stafford, R.J.},
year = {2013},
issn = {1861-6410},
journal = {International Journal of Computer Assisted Radiology and Surgery},
doi = {10.1007/s11548-013-0948-x},
title = {{Design and initial evaluation of a treatment planning software system for MRI-guided laser ablation in the brain}},
url = {http://dx.doi.org/10.1007/s11548-013-0948-x},
publisher = {Springer Berlin Heidelberg},
pages = {1-9},
url = {http://link.springer.com/article/10.1007/s11548-013-0948-x}
}
@article{fahrenholtz2013generalised,
author = {{\noopsort{zzzh}}S.~Fahrenholtz and R.~J.~Stafford and J.~Hazle and {\bf D.~Fuentes}},
title = {{Generalised polynomial chaos-based uncertainty quantification for planning MRgLITT procedures}},
journal = {International Journal of Hyperthermia},
volume = {29},
number = {4},
pages = {324--335},
year = {2013},
publisher = {Informa UK Ltd. London},
note = {PMC3924420},
url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3924420/}
}
@article{castilloetal13a,
author = {{\noopsort{zzzi}}R. Castillo and E. Castillo and {\bf D.~Fuentes} and M. Ahmad and A. M Wood and M. S. Ludwig and T. Guerrero},
title = {{A Reference Dataset for Deformable Image Registration Spatial Accuracy Evaluation using the COPDgene Study Archive}},
journal = {Physics in Medicine and Biology},
volume = {58},
number = {9},
pages = {2861},
year = {2013},
note = {PMC3677192}
}
@article{fuentesetal12a,
author = {{\noopsort{zzzj}}{\bf D.~Fuentes} and A. Elliott and J.~S.~Weinberg and A.~Shetty and J.~D.~Hazle and R.~J.~Stafford},
title = {{An Inverse Problem Approach to Recovery of In-Vivo Nanoparticle Concentrations from
Thermal Image Monitoring of MR-Guided Laser Induced Thermal Therapy}},
volume = {41},
number = {1},
pages = {100--111},
year = {2013},
journal = {{Ann. BME.}},
note = {PMC3524364},
url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3524364/}
}
@article{fengfuentes11b,
author = {{\noopsort{zzzk}}Y.~Feng and {\bf D. Fuentes}},
journal = {{Inter. Journal Hyperthermia}},
note = {invited review. PMC3930104},
title = {{Model-Based Planning and Real-Time Predictive Control for
Laser-Induced Thermal Therapy}},
volume = {27},
number = {8},
pages = {751--761},
year = {2011},
publisher = {Informa UK, Ltd. London}
}
@article{fuentesetal11a,
author = {{\noopsort{zzzl}}{\bf D.~Fuentes} and J.~Yung and J.~D.~Hazle and J.~S.~Weinberg and R.~J.~Stafford},
title = {{Kalman Filtered MR Temperature Imaging for Laser Induced Thermal Therapies}},
journal = {{Trans. Medical Imaging}},
volume = {31},
number = {4},
year = {2012},
pages = {984--994},
note = {Special Issue on Interventional Imaging, PMC3873725},
url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873725}
}
@article{fengfuentes11a,
author = {{\noopsort{zzzm}}Y.~Feng and {\bf D. Fuentes}},
journal = {Signal Processing Magazine, IEEE},
title = {{Real-Time Predictive Surgical Control for Cancer Treatment Using Laser Ablation
[Life Science]}},
year = {2011},
month = {May},
volume = {28},
number = {3},
pages = {134 -138}
}
@article{fuentesetal10a,
author = {{\noopsort{zzzn}}{\bf D.~Fuentes} and C.~Walker and A.~Elliott and A.~Shetty and J.~Hazle and R.~J.~Stafford},
title = {{MR Temperature Imaging Validation of a Bioheat Transfer Model for LITT}},
journal = {{International Journal of Hyperthermia}},
volume = {27},
number = {5},
pages = {453-464},
year = {2011},
note = {Cover Page, PMC3930085 },
doi = {10.3109/02656736.2011.557028}
}
@article{staffordetal10c,
author = {{\noopsort{zzzp}}R.~J.~Stafford and {\bf D.~Fuentes} and A.~Elliott and K.~Ahrar},
title = {{Laser Induced Thermal Therapy for Ablation}},
journal = {{Crit. Rev. Biomed. Eng.}},
year = {2010},
volume = {38},
number = {1},
pages = {79-100}
}
@article{fuentesetal09,
author = {{\noopsort{zzzq}}{\bf D.~Fuentes} and Y.~Feng and A.~Elliott and A.~Shetty and R.~J.~McNichols and J.~T.~Oden and R.~J.~Stafford},
title = {{Adaptive Real-Time Bioheat Transfer Models for Computer Driven MR-guided Laser Induced Thermal Therapy}},
journal = {{IEEE Trans. Biomed. Eng.}},
year = {2010},
volume = {57},
number = {5},
note = {Cover Page, PMC3857613},
url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3857613/}
}
@article{fuentesetal09c,
author = {{\noopsort{zzzr}}{\bf D.~Fuentes} and R.~Cardan and R.~J.~Stafford
and J.~Yung and G.~D.~Dodd~III and Y.~Feng},
title = {{High Fidelity Computer Models for Prospective Treatment Planning of RF Ablation with {\em in vitro} Experimental Correlation}},
journal = {{J. of Vascular and Interventional Radiology}},
year = {2010},
volume = {21},
number = {11},
pages = {1725-1732},
note = {PMC2966506},
url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2966506/}
}
@article{Fuentesetal08,
author = {{\noopsort{zzzt}}{\bf D.~Fuentes} and J.~T.~Oden and K.~R.~Diller and J.~Hazle and A.~Elliott and and A.~Shetty and R.~J.~Stafford },
title = {{Computational Modeling and Real-Time Control of Patient-Specific
Laser Treatment Cancer}},
journal = {{Ann. BME.}},
year = {2009},
number = {4},
volume = {37},
note = {PMC4064943},
pages = {763},
url = {http://www.springerlink.com/content/g413k3716q43412m}
}
@article{Fengetal08,
author = {{\noopsort{zzzu}}Y.~Feng and {\bf D.~Fuentes} and A.~Hawkins
and J.~Bass and M.~N.~Rylander },
title = {{Model-Based Optimization and Real-Time Control
for Laser Treatment of Heterogeneous Soft Tissues}},
journal = {{CMAME}},
year = {2009},
volume = {198},
number = {21-26},
pages = {1742-1750},
note = {{Advances in Simulation-Based Engineering Sciences Special Issue Honoring Prof. J. Tinsley Oden, PMC2871336}},
url = {http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V29-4VBDJ79-2&_user=109095&_coverDate=05%2F01%2F2009&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_searchStrId=1519489662&_rerunOrigin=google&_acct=C000059728&_version=1&_urlVersion=0&_userid=109095&md5=db7bd51748aad34e8e31f7d81db395f5&searchtype=a}
}
@article{Fengetal07,
author = {{\noopsort{zzzv}}Y.~Feng and {\bf D.~Fuentes} and A.~Hawkins and J.~Bass and M.~N.~Rylander and A.~Elliott and A.~Shetty and R.~J.~Stafford and J.~T.~Oden},
title = {{Nanoshell-Mediated Laser Surgery Simulation for Prostate Cancer Treatment}},
journal = {{Engineering with Computers}},
doi = {10.1007/s00366-008-0109-y},
year = {2009},
volume = {25},
number = {1},
note = {PMC2905827},
pages = {3-13}
}
@article{Odenetal08,
author = {{\noopsort{zzzw}}J.~T.~Oden and {\bf D.~Fuentes} and J.~Bass and Y.~Feng},
title = {{Dynamic-Data-Driven Systems Aid Patient-Specific Cancer Therapy}},
journal = {spie.org},
year = {2008},
doi = {10.1117/2.1200810.1220}
}
@inbook{Dilleretal07,
editor = {W.~J.~Minkowycz and E.~M.~Sparrow},
author = {{\noopsort{zzzx}}K.~R.~Diller and J.~T.~Oden and C.~Bajaj
and J.~C.~Browne and J.~Hazle and I.~Babu\v{s}ka and J.~Bass and
L.~Bidaut and L.~Demkowicz and A.~Elliott and Y.~Feng and {\bf
D.~Fuentes} and S.~Goswami and A.~Hawkins and S.~Khoshnevis and B.~Kwon and S.~Prudhomme and R.~J.~Stafford },
chapter = {{9: Computational Infrastructure for the Real-Time
Patient-Specific Treatment of Cancer}},
volume = {{3: Numerical Implementation of Bioheat Models and Equations}},
title = {{Advances in Numerical Heat Transfer}},
year = {2008},
publisher = {{Taylor \& Francis Group}},
url = {http://www.crcpress.com/product/isbn/9781420095210}
}
@article{Odenetal07,
author = {{\noopsort{zzzy}}J.~T.~Oden and K.~R.~Diller and C.~Bajaj
and J.~C.~Browne and J.~Hazle and I.~Babu\v{s}ka and J.~Bass and
L.~Demkowicz and Y.~Feng and {\bf D.~Fuentes} and S.~Prudhomme and M.~N.~Rylander and R.~J.~Stafford and Y.~Zhang },
title = {{Dynamic Data-Driven Finite Element Models for Laser Treatment of prostate cancer}},
journal = {{Num. Meth. PDE}},
year = {2007},
volume = {23},
number = {4},
pages = {904-922},
note = {PMC2850081},
url = {http://onlinelibrary.wiley.com/doi/10.1002/num.20251/abstract}
}
@article{Fuentesetal06,
author = {{\noopsort{zzzz}}{\bf D.~Fuentes} and D.~Littlefield and J.T.~Oden and S.~Prudhomme},
title = {{Extensions of goal-oriented error estimation methods to simulations of highly-nonlinear response of shock-loaded elastomer-reinforced structures}},
journal = {{Comput. Methods Appl. Mech. Engrg.}},
year = {2006},
volume = {195},
pages = {4659-4680},
url = {http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V29-4J555VV-1&_user=109095&_coverDate=07%2F15%2F2006&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_searchStrId=1519487821&_rerunOrigin=google&_acct=C000059728&_version=1&_urlVersion=0&_userid=109095&md5=57585032abd99350596405a0ba2e521f&searchtype=a}
}
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